Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7721

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16088 and 16089 are separated by 112 nucleotides16089 and 16090 are separated by 240 nucleotides mRNA_7720: 16088 - K03177 truB, PUS4, TRUB1 tRNA pseudouridine55 synthase, at 923,963 to 925,405 16088 mRNA_7721: 16089 - K19998 SCFD1, SLY1 sec1 family domain-containing protein 1, at 925,518 to 928,664 16089 mRNA_7722: 16090 - BLAST iQ calmodulin-binding motif protein [Moesziomyces..., at 928,905 to 930,722 16090

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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924,571 + 16088 mRNA_7720 0.42 -0.3
924,668 - 16088 mRNA_7720 0.49 -1.0
924,678 + 16088 mRNA_7720 0.50 +0.0
924,716 - 16088 mRNA_7720 0.52 -0.3
924,846 - 16088 mRNA_7720 0.61 +0.8
924,869 - 16088 mRNA_7720 0.63 +2.0
925,050 - 16088 mRNA_7720 0.75 -0.2
925,349 + +0.9
925,431 - -0.0
925,459 + -1.0
928,675 + -0.7
928,721 + -2.1
928,772 - -0.5
928,777 + +0.1
928,782 + +0.7
928,804 - -0.4
928,808 + -0.9
928,809 - -0.4
928,850 + +0.4
928,851 + -0.4
928,853 - +2.2
928,976 - -1.5
929,012 - -0.5
929,148 + 16090 mRNA_7722 0.13 +0.0
929,284 - 16090 mRNA_7722 0.21 -1.0
929,560 - 16090 mRNA_7722 0.36 -1.7
929,577 - 16090 mRNA_7722 0.37 +0.1

Or see this region's nucleotide sequence