Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7739

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16106 and 16107 are separated by 276 nucleotides16107 and 16108 are separated by 232 nucleotides mRNA_7738: 16106 - HMMPfam-BTB/POZ domain-PF00651,ProSiteProfiles-BTB domain profile.-PS50097, at 960,464 to 961,733 16106 mRNA_7739: 16107 - K20476 RIC1 RAB6A-GEF complex partner protein 1, at 962,010 to 966,625 16107 mRNA_7740: 16108 - HMMPfam-Kinetochore complex Sim4 subunit Fta1-PF13092, at 966,858 to 968,054 16108

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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961,150 + 16106 mRNA_7738 0.54 -0.2
961,157 - 16106 mRNA_7738 0.55 +0.1
961,215 + 16106 mRNA_7738 0.59 +0.6
961,584 + 16106 mRNA_7738 0.88 -0.9
961,649 - -0.2
961,655 + +0.6
961,658 - -0.3
961,912 + +0.7
962,030 - +0.2
962,620 - 16107 mRNA_7739 0.13 +0.3
962,813 + 16107 mRNA_7739 0.17 +0.2
962,954 - 16107 mRNA_7739 0.20 +0.3
962,994 + 16107 mRNA_7739 0.21 -0.0
963,092 + 16107 mRNA_7739 0.23 -0.2
963,433 + 16107 mRNA_7739 0.31 -0.9
963,525 + 16107 mRNA_7739 0.33 +0.1
963,529 - 16107 mRNA_7739 0.33 -0.1
963,573 + 16107 mRNA_7739 0.34 -0.0
963,806 + 16107 mRNA_7739 0.39 -0.2
963,978 + 16107 mRNA_7739 0.43 -1.4
963,990 + 16107 mRNA_7739 0.43 -0.2
964,006 - 16107 mRNA_7739 0.43 -0.2
964,007 + 16107 mRNA_7739 0.43 -0.5
964,097 - 16107 mRNA_7739 0.45 -1.3
964,283 + 16107 mRNA_7739 0.49 -0.1
965,172 + 16107 mRNA_7739 0.69 -0.7
965,195 + 16107 mRNA_7739 0.69 -0.7
965,437 + 16107 mRNA_7739 0.74 -0.2
965,935 - 16107 mRNA_7739 0.85 +0.2
966,019 + 16107 mRNA_7739 0.87 -0.0
966,040 - 16107 mRNA_7739 0.87 -1.1
966,048 + 16107 mRNA_7739 0.87 +0.3
966,106 - 16107 mRNA_7739 0.89 -0.9
966,150 - 16107 mRNA_7739 0.90 -0.6
966,156 + 16107 mRNA_7739 0.90 -0.7
966,204 - -1.7
966,204 - +0.3
966,220 + -1.1
966,242 - -0.8
966,246 + -0.3
966,350 + +0.8
966,400 - +0.9
966,510 + -0.2
966,759 + +0.1
966,763 + -0.1
966,768 + +0.7
966,935 - -1.0
966,949 - -0.3
966,997 + 16108 mRNA_7740 0.12 +0.0
966,997 + 16108 mRNA_7740 0.12 -0.1
966,997 + 16108 mRNA_7740 0.12 -0.0
966,997 + 16108 mRNA_7740 0.12 -0.2
967,114 - 16108 mRNA_7740 0.21 -0.8
967,193 - 16108 mRNA_7740 0.28 -0.2
967,215 + 16108 mRNA_7740 0.30 +0.0
967,288 + 16108 mRNA_7740 0.36 -0.1

Or see this region's nucleotide sequence