Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7742

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16109 and 16110 are separated by 239 nucleotides16110 and 16111 are separated by 441 nucleotides mRNA_7741: 16109 - Hypothetical Protein, at 968,367 to 969,216 16109 mRNA_7742: 16110 - KOG3630 Nuclear pore complex, Nup214/CAN component, at 969,456 to 971,369 16110 mRNA_7743: 16111 - K09569 FKBP2 FK506-binding protein 2, at 971,811 to 972,530 16111

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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968,769 - 16109 mRNA_7741 0.47 -0.5
968,904 + 16109 mRNA_7741 0.63 +0.5
968,923 + 16109 mRNA_7741 0.65 -0.5
969,150 + -1.0
969,167 - +0.9
969,168 + +1.1
969,293 - -1.6
969,335 - +0.1
971,261 - +0.2
971,514 + +0.3
971,547 + -0.5
971,670 - +0.2
971,670 + -0.8
971,968 - 16111 mRNA_7743 0.22 -1.0
972,001 + 16111 mRNA_7743 0.26 +0.8
972,094 - 16111 mRNA_7743 0.39 +1.8
972,200 - 16111 mRNA_7743 0.54 +0.5
972,201 + 16111 mRNA_7743 0.54 -0.9
972,262 + 16111 mRNA_7743 0.63 +0.4

Or see this region's nucleotide sequence