Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7749

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16117 and 16118 overlap by 11 nucleotides mRNA_7749: 16117 - Hypothetical Protein, at 981,681 to 982,227 16117 mRNA_7750: 16118 - Hypothetical Protein, at 982,217 to 982,643 16118

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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980,794 - -0.3
980,908 + -0.3
981,051 + -0.3
981,218 + -0.0
981,222 + +0.4
981,224 + -0.2
981,224 + +0.1
981,370 + +0.1
981,647 - -0.9
981,657 - +0.1
981,679 - +0.1
981,828 + 16117 mRNA_7749 0.27 +1.0
981,946 - 16117 mRNA_7749 0.48 -0.5
981,983 - 16117 mRNA_7749 0.55 -1.8
982,244 - -0.9
982,362 - 16118 mRNA_7750 0.34 +0.7
982,392 - 16118 mRNA_7750 0.41 -0.0
982,434 - 16118 mRNA_7750 0.51 +0.4
982,533 + 16118 mRNA_7750 0.74 -0.8
982,668 + +0.3
982,884 - +0.3

Or see this region's nucleotide sequence