Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7787

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16154 and 16155 are separated by 450 nucleotides16155 and 16156 are separated by 390 nucleotides mRNA_7786: 16154 - HMMPfam-Centromere-associated protein K-PF11802, at 1,066,026 to 1,067,472 16154 mRNA_7787: 16155 - Hypothetical Protein, at 1,067,923 to 1,069,410 16155 mRNA_7788: 16156 - Hypothetical Protein, at 1,069,801 to 1,071,312 16156

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,066,925 + 16154 mRNA_7786 0.62 -0.6
1,066,971 - 16154 mRNA_7786 0.65 -0.2
1,067,105 - 16154 mRNA_7786 0.75 +0.3
1,067,235 + 16154 mRNA_7786 0.84 -0.2
1,067,394 - -0.7
1,067,395 - +0.4
1,067,532 + -0.3
1,067,541 + -1.8
1,067,677 - -0.1
1,067,681 - +0.7
1,067,692 - +0.1
1,067,692 - +0.3
1,067,710 + +1.9
1,067,845 + -0.1
1,067,856 + -0.2
1,067,857 - -0.6
1,067,887 + -1.8
1,067,887 + +1.0
1,067,983 - -0.9
1,068,005 + -0.2
1,068,143 + 16155 mRNA_7787 0.15 -0.8
1,068,143 + 16155 mRNA_7787 0.15 +0.9
1,068,309 + 16155 mRNA_7787 0.26 -0.2
1,068,421 - 16155 mRNA_7787 0.33 +0.9
1,068,429 + 16155 mRNA_7787 0.34 -0.1
1,068,687 - 16155 mRNA_7787 0.51 +0.1
1,069,094 - 16155 mRNA_7787 0.79 +0.1
1,069,145 - 16155 mRNA_7787 0.82 -1.5
1,069,434 + +1.0
1,069,568 + +0.7
1,069,611 + +0.1
1,069,698 - -0.3
1,069,712 - +0.4
1,069,856 - -0.1
1,069,872 + -0.6
1,069,874 - -0.6
1,069,874 - -0.6
1,069,876 - -0.8
1,069,962 + 16156 mRNA_7788 0.11 -0.5
1,070,013 + 16156 mRNA_7788 0.14 +0.2
1,070,195 + 16156 mRNA_7788 0.26 +0.1
1,070,195 + 16156 mRNA_7788 0.26 -0.4
1,070,285 + 16156 mRNA_7788 0.32 +1.0
1,070,285 + 16156 mRNA_7788 0.32 +0.3
1,070,318 + 16156 mRNA_7788 0.34 -0.0

Or see this region's nucleotide sequence