Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7793

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16161 and 16162 are separated by 249 nucleotides mRNA_7793: 16161 - KOG2533 Permease of the major facilitator superfamily, at 1,079,751 to 1,082,050 16161 mRNA_7794: 16162 - BLAST rRNA (adenine-N6,N6)-dimethyltransferase [Rhizoctonia..., at 1,082,300 to 1,083,358 16162

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,078,765 + -1.2
1,078,773 - -0.1
1,078,776 + +0.2
1,078,925 + -0.5
1,079,128 + -0.7
1,079,222 - -0.4
1,079,246 - +0.1
1,079,248 + -2.4
1,079,255 + -0.3
1,079,326 + -0.4
1,079,329 - -0.6
1,079,384 + -0.7
1,079,398 - -0.2
1,079,419 - +0.5
1,079,529 - +0.4
1,079,530 - +0.8
1,079,532 - +0.1
1,079,549 + -0.4
1,079,557 - -0.6
1,079,557 - -0.1
1,079,562 + -0.1
1,079,562 + -0.6
1,079,568 + -0.2
1,079,658 - -2.1
1,079,743 - +0.8
1,079,995 - 16161 mRNA_7793 0.11 -1.1
1,080,000 - 16161 mRNA_7793 0.11 -0.1
1,080,145 - 16161 mRNA_7793 0.17 -0.4
1,080,177 - 16161 mRNA_7793 0.19 +0.0
1,080,379 + 16161 mRNA_7793 0.27 +1.2
1,080,381 + 16161 mRNA_7793 0.27 -0.8
1,080,752 - 16161 mRNA_7793 0.44 -2.6
1,080,763 + 16161 mRNA_7793 0.44 +0.9
1,080,896 - 16161 mRNA_7793 0.50 +0.1
1,080,953 - 16161 mRNA_7793 0.52 -1.8
1,081,174 - 16161 mRNA_7793 0.62 +0.1
1,081,175 + 16161 mRNA_7793 0.62 -0.4
1,081,346 + 16161 mRNA_7793 0.69 -0.2
1,081,622 + 16161 mRNA_7793 0.81 +0.0
1,081,854 - -0.1
1,082,055 + -0.2
1,082,305 - -0.2
1,082,476 + 16162 mRNA_7794 0.17 -0.2
1,082,732 - 16162 mRNA_7794 0.41 +0.4
1,082,732 + 16162 mRNA_7794 0.41 +0.1
1,082,894 + 16162 mRNA_7794 0.56 -0.0
1,082,925 + 16162 mRNA_7794 0.59 -1.1
1,082,930 - 16162 mRNA_7794 0.59 -0.1
1,082,931 + 16162 mRNA_7794 0.60 -0.2
1,082,932 - 16162 mRNA_7794 0.60 -0.5
1,082,949 - 16162 mRNA_7794 0.61 -0.3
1,082,956 - 16162 mRNA_7794 0.62 -0.2
1,082,957 + 16162 mRNA_7794 0.62 +0.8
1,083,044 - 16162 mRNA_7794 0.70 -0.6
1,083,045 - 16162 mRNA_7794 0.70 +0.2

Or see this region's nucleotide sequence