Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7822

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16189 and 16190 are separated by 496 nucleotides mRNA_7821: 16189 - Hypothetical Protein, at 1,146,183 to 1,147,264 16189 mRNA_7822: 16190 - Hypothetical Protein, at 1,147,761 to 1,148,329 16190

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,146,857 - 16189 mRNA_7821 0.62 -0.1
1,146,863 - 16189 mRNA_7821 0.63 -0.1
1,146,987 - 16189 mRNA_7821 0.74 +0.4
1,147,029 + 16189 mRNA_7821 0.78 +0.7
1,147,148 - 16189 mRNA_7821 0.89 -2.6
1,147,178 + +2.1
1,147,188 + +0.2
1,147,317 - +0.3
1,147,327 + +0.2
1,147,333 + -0.8
1,147,707 - +0.5
1,147,713 + -0.1
1,147,872 + 16190 mRNA_7822 0.20 -1.8
1,148,188 + 16190 mRNA_7822 0.75 -0.1
1,148,638 - +0.1
1,148,645 - -0.5
1,148,655 - -0.3
1,148,669 + -1.5
1,148,681 - -0.4
1,148,752 + -0.4
1,148,865 - -1.3
1,148,993 - +1.0
1,149,018 + +0.0
1,149,133 - +0.8

Or see this region's nucleotide sequence