Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7827

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16194 and 16195 are separated by 664 nucleotides16195 and 16196 are separated by 232 nucleotides mRNA_7826: 16194 - KOG2533 Permease of the major facilitator superfamily, at 1,154,864 to 1,157,345 16194 mRNA_7827: 16195 - KOG4680 Uncharacterized conserved protein, contains ML domain, at 1,158,010 to 1,158,995 16195 mRNA_7828: 16196 - K01940 argG, ASS1 argininosuccinate synthase, at 1,159,228 to 1,161,010 16196

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,157,279 - +0.9
1,157,305 + -0.0
1,157,312 + -0.1
1,157,344 - -0.5
1,157,566 + -0.2
1,157,582 + -0.3
1,157,723 - +0.4
1,157,743 - -0.2
1,157,748 - -0.2
1,157,762 - -0.2
1,157,773 + -0.2
1,157,785 + +0.1
1,157,798 + +0.9
1,157,870 + -0.4
1,157,882 + -0.7
1,157,998 + -1.3
1,158,014 + -0.8
1,158,183 + 16195 mRNA_7827 0.18 +0.9
1,158,221 + 16195 mRNA_7827 0.21 -0.5
1,158,433 - 16195 mRNA_7827 0.43 +0.2
1,158,460 + 16195 mRNA_7827 0.46 +0.4
1,158,600 + 16195 mRNA_7827 0.60 -0.3
1,158,605 + 16195 mRNA_7827 0.60 -0.2
1,158,861 - 16195 mRNA_7827 0.86 -2.2
1,158,884 + 16195 mRNA_7827 0.89 +0.7
1,158,891 + 16195 mRNA_7827 0.89 -0.4
1,159,024 - +0.3
1,159,051 + -0.2
1,159,057 + -0.2
1,159,218 + -0.9
1,159,271 - +0.3
1,159,459 - 16196 mRNA_7828 0.13 -1.2
1,159,516 - 16196 mRNA_7828 0.16 +0.2

Or see this region's nucleotide sequence