Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7862

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16229 and 16230 are separated by 356 nucleotides16230 and 16231 are separated by 113 nucleotides mRNA_7861: 16229 - BLAST Transcriptional activator Myb [Leucoagaricus sp. SymC..., at 1,243,889 to 1,246,571 16229 mRNA_7862: 16230 - Hypothetical Protein, at 1,246,928 to 1,249,617 16230 mRNA_7863: 16231 - K11407 HDAC6 histone deacetylase 6, at 1,249,731 to 1,253,390 16231

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,246,437 - -0.3
1,246,567 - -0.6
1,246,568 + +0.3
1,246,592 + +0.9
1,246,657 + +1.0
1,246,672 - +0.1
1,246,705 + +0.4
1,246,822 + +0.5
1,246,845 + -0.8
1,246,849 + -1.9
1,246,868 + +0.2
1,247,014 - +1.7
1,247,015 - -1.4
1,247,025 - +0.2
1,247,030 + +0.5
1,247,033 + -0.1
1,247,037 + +0.3
1,247,056 - -0.6
1,247,187 + -0.5
1,247,195 + -0.7
1,247,196 - -0.7
1,247,217 + 16230 mRNA_7862 0.11 -0.6
1,247,326 + 16230 mRNA_7862 0.15 -0.2
1,247,622 + 16230 mRNA_7862 0.26 +0.2
1,247,797 + 16230 mRNA_7862 0.32 +1.2
1,247,906 - 16230 mRNA_7862 0.36 -0.5
1,248,012 + 16230 mRNA_7862 0.40 -0.1
1,248,767 - 16230 mRNA_7862 0.68 +0.5
1,248,827 + 16230 mRNA_7862 0.71 +0.6
1,249,500 + -0.7
1,249,690 - -1.5
1,249,805 + +0.4
1,249,826 - -0.9
1,249,912 + +1.1

Or see this region's nucleotide sequence