Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7890

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16257 and 16258 are separated by 734 nucleotides16258 and 16259 are separated by 259 nucleotides mRNA_7889: 16257 - Hypothetical Protein, at 1,307,542 to 1,308,171 16257 mRNA_7890: 16258 - K19564 CTR, HNM1 choline transport protein, at 1,308,906 to 1,311,166 16258 mRNA_7891: 16259 - Hypothetical Protein, at 1,311,426 to 1,311,848 16259

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,308,078 - 16257 mRNA_7889 0.85 +0.4
1,308,086 + 16257 mRNA_7889 0.86 +0.4
1,308,222 - +0.9
1,308,365 - -0.2
1,308,365 - +1.0
1,308,412 + +0.4
1,308,500 + +0.2
1,308,652 - +0.2
1,308,655 - -0.6
1,308,661 - -0.7
1,308,673 + +0.5
1,308,675 + +0.1
1,308,678 + -1.3
1,308,691 + -1.2
1,308,696 - -0.5
1,308,717 - +0.2
1,308,732 + +0.3
1,308,745 + +0.7
1,308,767 - -0.2
1,308,784 - -0.3
1,308,787 - +0.3
1,308,788 + -0.8
1,308,788 - -0.4
1,308,800 + +0.6
1,308,800 + -0.6
1,308,809 + -1.3
1,308,811 + -0.3
1,308,815 + -0.4
1,308,818 + -1.0
1,308,848 + +0.5
1,308,926 - +0.0
1,308,972 + +1.8
1,308,974 - -0.2
1,308,974 + -0.1
1,308,977 + +0.2
1,309,072 + -0.9
1,309,111 - -2.3
1,309,123 - -0.8
1,309,129 - -0.8
1,309,169 + 16258 mRNA_7890 0.12 -1.9
1,309,223 + 16258 mRNA_7890 0.14 -1.0
1,309,226 - 16258 mRNA_7890 0.14 -0.5
1,309,238 - 16258 mRNA_7890 0.15 -0.3
1,309,530 - 16258 mRNA_7890 0.28 +0.2
1,309,539 - 16258 mRNA_7890 0.28 -0.0
1,309,560 - 16258 mRNA_7890 0.29 -0.5
1,309,569 + 16258 mRNA_7890 0.29 +0.0
1,309,599 + 16258 mRNA_7890 0.31 -0.0
1,309,600 + 16258 mRNA_7890 0.31 +0.2
1,309,846 + 16258 mRNA_7890 0.42 -1.2
1,309,964 - 16258 mRNA_7890 0.47 -0.7
1,309,978 - 16258 mRNA_7890 0.47 +1.3
1,310,132 - 16258 mRNA_7890 0.54 +0.0
1,310,184 - 16258 mRNA_7890 0.57 -0.1
1,310,248 + 16258 mRNA_7890 0.59 -0.4
1,310,434 - 16258 mRNA_7890 0.68 +1.2
1,310,563 + 16258 mRNA_7890 0.73 -0.1
1,310,593 + 16258 mRNA_7890 0.75 -0.1
1,310,977 + -2.6
1,311,035 + -0.3
1,311,287 - +0.3
1,311,321 - +0.7
1,311,329 - -0.4
1,311,338 + -0.2
1,311,342 + -0.2
1,311,343 - +0.8
1,311,469 - 16259 mRNA_7891 0.10 +0.4
1,311,650 - 16259 mRNA_7891 0.53 -0.1
1,311,777 - 16259 mRNA_7891 0.83 +0.4

Or see this region's nucleotide sequence