Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7902

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16270 and 16271 are separated by 211 nucleotides mRNA_7902: 16270 - K13348 MPV17 protein Mpv17, at 1,338,416 to 1,339,607 16270 mRNA_7903: 16271 - K14810 DDX56, DBP9 ATP-dependent RNA helicase DDX56/DBP9, at 1,339,819 to 1,342,318 16271

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,337,416 - +1.9
1,337,652 - -1.3
1,337,832 - +0.1
1,338,022 + +0.2
1,338,117 - +0.3
1,338,143 - +1.3
1,338,147 - -0.6
1,338,147 - +0.7
1,338,157 - +0.2
1,338,161 + -0.2
1,338,165 + -0.2
1,338,165 + -0.7
1,338,165 + -0.3
1,338,165 + -1.0
1,338,165 + +2.1
1,338,246 - -1.1
1,338,303 + -0.5
1,338,632 + 16270 mRNA_7902 0.18 +0.0
1,338,714 + 16270 mRNA_7902 0.25 -1.2
1,338,715 - 16270 mRNA_7902 0.25 -0.1
1,338,984 - 16270 mRNA_7902 0.48 -0.3
1,339,065 - 16270 mRNA_7902 0.54 +0.6
1,339,321 - 16270 mRNA_7902 0.76 -1.7
1,339,514 - -0.8
1,339,736 + -1.4
1,339,737 - -0.1
1,339,737 - -1.4
1,339,772 + +0.2

Or see this region's nucleotide sequence