Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7933

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16300 and 16301 are separated by 287 nucleotides16301 and 16302 are separated by 461 nucleotides mRNA_7932: 16300 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 47,221 to 48,247 16300 mRNA_7933: 16301 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 48,535 to 49,423 16301 mRNA_7934: 16302 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 49,885 to 50,735 16302

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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47,673 + 16300 mRNA_7932 0.44 -0.4
47,855 + 16300 mRNA_7932 0.62 -0.7
48,004 - 16300 mRNA_7932 0.76 -1.1
48,286 - +0.6
48,453 + +0.2
48,641 - 16301 mRNA_7933 0.12 -0.0
48,755 + 16301 mRNA_7933 0.25 -0.1
49,066 + 16301 mRNA_7933 0.60 -0.5
49,148 - 16301 mRNA_7933 0.69 +1.5
49,165 + 16301 mRNA_7933 0.71 +0.3
49,288 + 16301 mRNA_7933 0.85 -0.7
49,293 - 16301 mRNA_7933 0.85 -0.9
49,475 - +0.5
49,708 - +1.1
49,711 - +0.3
49,729 + +0.2
49,729 + +0.8
49,774 + +0.4
49,786 - +0.0
49,792 - +0.1
49,804 - -0.3
49,861 + +0.2
50,007 - 16302 mRNA_7934 0.14 -0.4
50,038 + 16302 mRNA_7934 0.18 -0.4
50,043 - 16302 mRNA_7934 0.19 -1.1
50,054 + 16302 mRNA_7934 0.20 +1.4
50,069 + 16302 mRNA_7934 0.22 -1.3
50,186 - 16302 mRNA_7934 0.35 +0.9

Or see this region's nucleotide sequence