Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7978

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16345 and 16346 are separated by 324 nucleotides16346 and 16347 are separated by 145 nucleotides mRNA_7977: 16345 - K17757 CARKD ATP-dependent NAD(P)H-hydrate dehydratase, at 134,234 to 135,920 16345 mRNA_7978: 16346 - K13341 PEX7, PTS2R peroxin-7, at 136,245 to 137,738 16346 mRNA_7979: 16347 - KOG0504 FOG Ankyrin repeat, at 137,884 to 138,763 16347

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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135,439 + 16345 mRNA_7977 0.71 -0.5
135,469 + 16345 mRNA_7977 0.73 -0.8
136,191 + -1.7
136,197 + +0.4
136,354 + -0.1
136,527 - 16346 mRNA_7978 0.19 +0.8
136,792 + 16346 mRNA_7978 0.37 -0.6
137,045 - 16346 mRNA_7978 0.54 +0.2
137,253 + 16346 mRNA_7978 0.67 +0.1
137,370 - 16346 mRNA_7978 0.75 -0.1
137,523 + 16346 mRNA_7978 0.86 -0.8
137,529 + 16346 mRNA_7978 0.86 +0.4
137,817 - -0.4
138,045 + 16347 mRNA_7979 0.18 +0.1

Or see this region's nucleotide sequence