Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8055

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16422 and 16423 are separated by 127 nucleotides16423 and 16424 are separated by 276 nucleotides mRNA_8054: 16422 - K03036 PSMD11, RPN6 26S proteasome regulatory subunit N6, at 310,865 to 312,762 16422 mRNA_8055: 16423 - K06173 truA, PUS1 tRNA pseudouridine38-40 synthase, at 312,890 to 314,981 16423 mRNA_8056: 16424 - Hypothetical Protein, at 315,258 to 318,661 16424

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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312,873 - -0.1
312,885 + -1.6
312,969 - -0.2
313,018 + -0.1
313,054 + -0.7
313,579 - 16423 mRNA_8055 0.33 +0.7
315,081 - +0.1
315,083 - -0.7
315,383 - +0.7

Or see this region's nucleotide sequence