Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8126

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16493 and 16494 are separated by 97 nucleotides16494 and 16495 are separated by 698 nucleotides mRNA_8125: 16493 - Hypothetical Protein, at 478,218 to 479,543 16493 mRNA_8126: 16494 - BLAST putative 15-O-acetyltransferase Tri3 [Moniliophthora ..., at 479,641 to 482,114 16494 mRNA_8127: 16495 - BLAST CigA protein-like protein [Phycomyces blakesleean..., at 482,813 to 485,416 16495

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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478,774 - 16493 mRNA_8125 0.42 -0.2
479,196 + 16493 mRNA_8125 0.74 -0.6
479,202 + 16493 mRNA_8125 0.74 -0.7
479,510 + -0.2
479,714 - -1.6
480,244 + 16494 mRNA_8126 0.24 +0.5
480,675 - 16494 mRNA_8126 0.42 -0.6
480,951 - 16494 mRNA_8126 0.53 +0.3
481,225 + 16494 mRNA_8126 0.64 +0.3
481,564 - 16494 mRNA_8126 0.78 -0.1
481,678 - 16494 mRNA_8126 0.82 -0.0
481,947 - +0.1
482,528 - +0.1

Or see this region's nucleotide sequence