Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8146

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16513 and 16514 are separated by 208 nucleotides16514 and 16515 are separated by 281 nucleotides mRNA_8145: 16513 - K15304 RANBP3 Ran-binding protein 3, at 518,265 to 522,947 16513 mRNA_8146: 16514 - HMMPfam-PH domain-PF00169,ProSiteProfiles-PH domain profile.-PS50003,SMART-Pleckstrin homology domain.-SM00233,SUPERFAMILY--SSF50729,SUPERFAMILY--SSF55753, at 523,156 to 525,295 16514 mRNA_8147: 16515 - HMMPfam-Enoyl-CoA hydratase/isomerase family-PF00378,SUPERFAMILY--SSF52096, at 525,577 to 526,736 16515

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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522,298 + 16513 mRNA_8145 0.86 -0.5
522,423 + 16513 mRNA_8145 0.89 -0.7
522,714 + -0.5
522,733 - +0.1
522,972 - -0.4
522,992 + -0.5
523,005 + +0.8
523,075 - -1.5
523,160 - +0.4
523,171 - +0.3
523,307 + +0.2
524,590 - 16514 mRNA_8146 0.67 -0.6
524,595 + 16514 mRNA_8146 0.67 -0.4
524,890 + 16514 mRNA_8146 0.81 +0.0
524,935 - 16514 mRNA_8146 0.83 -0.4
525,163 + +0.2
525,179 - +0.1
525,310 - -0.1
525,335 + -1.1
525,338 - -0.4
525,353 - -0.4
525,354 - -0.4
525,474 - +0.6
525,615 - +0.8
525,657 + -0.7
525,766 + 16515 mRNA_8147 0.16 -0.7
525,794 + 16515 mRNA_8147 0.19 -0.1
526,113 + 16515 mRNA_8147 0.46 +0.0
526,194 - 16515 mRNA_8147 0.53 +0.0

Or see this region's nucleotide sequence