Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8176

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16543 and 16544 are separated by 295 nucleotides16544 and 16545 are separated by 261 nucleotides mRNA_8175: 16543 - K15303 AKR7 aflatoxin B1 aldehyde reductase, at 600,954 to 602,417 16543 mRNA_8176: 16544 - Interpro DNA replication regulator SLD3, at 602,713 to 604,782 16544 mRNA_8177: 16545 - Hypothetical Protein, at 605,044 to 605,937 16545

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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602,156 - 16543 mRNA_8175 0.82 +0.7
602,327 - -0.3
602,346 + -0.8
602,346 - -0.6
602,409 - -0.7
602,449 - -0.2
602,473 + -0.1
602,475 - -1.2
602,598 - -0.4
602,649 - -0.0
602,656 - -0.8
602,679 + +1.4
605,082 + +0.7
605,147 - 16545 mRNA_8177 0.12 -1.6
605,443 + 16545 mRNA_8177 0.45 -0.2
605,560 - 16545 mRNA_8177 0.58 -1.4

Or see this region's nucleotide sequence