Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8177

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16544 and 16545 are separated by 261 nucleotides16545 and 16546 are separated by 128 nucleotides mRNA_8176: 16544 - Interpro DNA replication regulator SLD3, at 602,713 to 604,782 16544 mRNA_8177: 16545 - Hypothetical Protein, at 605,044 to 605,937 16545 mRNA_8178: 16546 - Hypothetical Protein, at 606,066 to 607,018 16546

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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605,082 + +0.7
605,147 - 16545 mRNA_8177 0.12 -1.6
605,443 + 16545 mRNA_8177 0.45 -0.2
605,560 - 16545 mRNA_8177 0.58 -1.4
605,870 - +1.3
606,064 - -1.6
606,283 - 16546 mRNA_8178 0.23 -0.4

Or see this region's nucleotide sequence