Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8213

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16580 and 16581 are separated by 137 nucleotides16581 and 16582 are separated by 225 nucleotides mRNA_8212: 16580 - K17878 NNT1 nicotinamide N-methyltransferase, at 680,778 to 681,996 16580 mRNA_8213: 16581 - KOG1590 Uncharacterized conserved protein, at 682,134 to 683,094 16581 mRNA_8214: 16582 - BLAST NADH-ubiquinone oxidoreductase 9.5 kDa subunit [R..., at 683,320 to 684,168 16582

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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681,180 - 16580 mRNA_8212 0.33 -0.6
681,482 - 16580 mRNA_8212 0.58 +0.6
681,514 + 16580 mRNA_8212 0.60 -0.4
681,782 - 16580 mRNA_8212 0.82 -0.8
681,808 - 16580 mRNA_8212 0.84 +0.4
681,812 + 16580 mRNA_8212 0.85 -1.4
681,931 - -0.4
681,934 - -0.1
681,942 - +0.3
682,066 - -0.6
682,067 - -0.9
682,074 - +0.7
682,080 + -0.4
682,085 - -0.6
682,085 + -0.0
682,087 - +0.4
682,109 + +0.1
682,230 - 16581 mRNA_8213 0.10 -0.4
682,230 - 16581 mRNA_8213 0.10 +1.7
683,114 + -0.1
683,270 - -0.3
683,977 + 16582 mRNA_8214 0.77 -0.3

Or see this region's nucleotide sequence