Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8218

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16586 and 16587 are separated by 297 nucleotides mRNA_8218: 16586 - K02905 RP-L29e, RPL29 large subunit ribosomal protein L29e, at 697,887 to 698,253 16586 mRNA_8219: 16587 - K15202 GTF3C5, TFC1 general transcription factor 3C polypeptide 5 (transcription factor C subunit 1), at 698,551 to 700,808 16587

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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697,032 - +0.4
697,033 + -1.5
697,308 - -0.2
697,335 + -1.3
697,342 + +0.5
697,352 + +1.2
697,477 - -0.4
697,481 - -0.5
697,482 - +0.2
697,515 + -0.6
697,783 + -0.2
698,266 + +0.0
698,853 - 16587 mRNA_8219 0.13 -0.4
698,977 - 16587 mRNA_8219 0.19 -0.3
699,080 + 16587 mRNA_8219 0.23 -1.6

Or see this region's nucleotide sequence