Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8221

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16588 and 16589 are separated by 100 nucleotides16589 and 16590 are separated by 374 nucleotides mRNA_8220: 16588 - KOG3894 SNARE protein Syntaxin 18/UFE1, at 701,037 to 702,340 16588 mRNA_8221: 16589 - KOG3140 Predicted membrane protein, at 702,441 to 703,886 16589 mRNA_8222: 16590 - KOG3140 Predicted membrane protein, at 704,261 to 706,813 16590

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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702,357 + -1.5
702,453 + +1.8
702,481 - +0.1
702,640 - 16589 mRNA_8221 0.14 +0.4
702,642 + 16589 mRNA_8221 0.14 -0.4
703,227 + 16589 mRNA_8221 0.54 +0.6
703,825 + +0.8
704,673 - 16590 mRNA_8222 0.16 -0.9

Or see this region's nucleotide sequence