Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8251

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16618 and 16619 are separated by 652 nucleotides16619 and 16620 are separated by 569 nucleotides mRNA_8250: 16618 - K17069 MET17 O-acetylhomoserine/O-acetylserine sulfhydrylase, at 764,459 to 766,227 16618 mRNA_8251: 16619 - HMMPfam-SacI homology domain-PF02383,ProSiteProfiles-Sac phosphatase domain profile.-PS50275, at 766,880 to 770,400 16619 mRNA_8252: 16620 - HMMPfam-Domain of unknown function (DUF4451)-PF14616, at 770,970 to 773,846 16620

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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765,908 + 16618 mRNA_8250 0.82 -0.6
766,023 + 16618 mRNA_8250 0.88 -1.1
766,059 + +0.2
766,071 - -0.1
766,201 - -0.4
766,214 + -0.0
766,284 - -0.2
766,331 - -2.9
766,340 - -1.0
766,358 - -0.5
766,505 + -0.4
766,651 - +0.3
766,655 + +0.8
766,667 + -0.9
766,958 - -1.2
767,244 - 16619 mRNA_8251 0.10 +0.9
767,251 - 16619 mRNA_8251 0.11 -1.9
767,399 + 16619 mRNA_8251 0.15 +0.9
767,961 - 16619 mRNA_8251 0.31 -0.0
768,124 + 16619 mRNA_8251 0.35 +1.9
768,250 + 16619 mRNA_8251 0.39 -0.4
768,269 + 16619 mRNA_8251 0.39 +0.4
768,519 + 16619 mRNA_8251 0.47 -0.9
768,540 + 16619 mRNA_8251 0.47 -0.1
768,791 - 16619 mRNA_8251 0.54 -1.6
768,817 + 16619 mRNA_8251 0.55 +0.7
769,109 - 16619 mRNA_8251 0.63 -0.7
769,227 + 16619 mRNA_8251 0.67 +2.5
769,319 + 16619 mRNA_8251 0.69 +0.9
769,396 + 16619 mRNA_8251 0.71 -0.5
770,315 - +0.2
770,404 + +0.1
770,427 - -2.3
770,438 + -0.1
770,445 + -0.7
770,453 + -0.9
770,461 + -0.3
770,461 - -0.1
770,581 - +0.4
770,584 - -0.6
770,736 - -1.3
770,748 - -0.5
770,749 - -0.1
770,750 + +0.1
770,778 + -1.2
770,913 + -1.9
770,916 - -1.2
770,923 - +0.2
771,059 - +2.6
771,254 - -1.4

Or see this region's nucleotide sequence