Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8252

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16619 and 16620 are separated by 569 nucleotides16620 and 16621 are separated by 705 nucleotides mRNA_8251: 16619 - HMMPfam-SacI homology domain-PF02383,ProSiteProfiles-Sac phosphatase domain profile.-PS50275, at 766,880 to 770,400 16619 mRNA_8252: 16620 - HMMPfam-Domain of unknown function (DUF4451)-PF14616, at 770,970 to 773,846 16620 mRNA_8253: 16621 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 774,552 to 775,844 16621

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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770,315 - +0.2
770,404 + +0.1
770,427 - -2.3
770,438 + -0.1
770,445 + -0.7
770,453 + -0.9
770,461 + -0.3
770,461 - -0.1
770,581 - +0.4
770,584 - -0.6
770,736 - -1.3
770,748 - -0.5
770,749 - -0.1
770,750 + +0.1
770,778 + -1.2
770,913 + -1.9
770,916 - -1.2
770,923 - +0.2
771,059 - +2.6
771,254 - -1.4
771,905 + 16620 mRNA_8252 0.32 +0.3
774,033 + +0.9
774,607 - -0.4

Or see this region's nucleotide sequence