Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8255

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16622 and 16623 are separated by 353 nucleotides16623 and 16624 are separated by 677 nucleotides mRNA_8254: 16622 - HMMPfam-Stc1 domain-PF12898, at 776,228 to 777,333 16622 mRNA_8255: 16623 - K01792 E5.1.3.15 glucose-6-phosphate 1-epimerase, at 777,687 to 778,914 16623 mRNA_8256: 16624 - K11324 DMAP1, SWC4, EAF2 DNA methyltransferase 1-associated protein 1, at 779,592 to 781,358 16624

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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776,801 + 16622 mRNA_8254 0.52 -0.6
777,072 + 16622 mRNA_8254 0.76 +0.3
777,189 + 16622 mRNA_8254 0.87 -0.1
777,630 + -0.7
778,356 + 16623 mRNA_8255 0.54 -0.1
778,362 + 16623 mRNA_8255 0.55 +1.3
778,550 + 16623 mRNA_8255 0.70 +0.1
778,821 + +0.0
778,836 - -0.3
778,937 - +0.0
778,949 + +0.4
778,963 - +1.1
778,963 - -0.1
778,972 + +0.7
778,975 + -0.6
779,008 + -1.3
779,123 - +0.9
779,139 + +0.0
779,256 - -0.7
779,409 - +0.3

Or see this region's nucleotide sequence