Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8273

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16640 and 16641 are separated by 342 nucleotides16641 and 16642 are separated by 427 nucleotides mRNA_8272: 16640 - K07750 E1.14.13.72, SC4MOL, ERG25 methylsterol monooxygenase, at 815,448 to 817,149 16640 mRNA_8273: 16641 - K01866 YARS, tyrS tyrosyl-tRNA synthetase, at 817,492 to 819,082 16641 mRNA_8274: 16642 - KOG4080 Mitochondrial ribosomal protein L32, at 819,510 to 820,015 16642

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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817,289 - -0.6
817,304 - +0.3
817,323 + -0.1
817,413 - +0.8
817,415 - +0.9
817,426 - -1.9
819,128 - +0.0
819,135 - -1.2
819,148 - +0.4
819,168 + -1.5
819,279 - -0.3
819,312 + -1.2
819,317 + +0.2
820,023 - -0.5

Or see this region's nucleotide sequence