Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8296

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16663 and 16664 are separated by 417 nucleotides mRNA_8295: 16663 - Hypothetical Protein, at 869,651 to 870,841 16663 mRNA_8296: 16664 - K19951 TBC1D8_9 TBC1 domain family member 8/9, at 871,259 to 875,299 16664

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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870,579 - 16663 mRNA_8295 0.78 -0.4
870,601 + 16663 mRNA_8295 0.80 -1.2
870,606 - 16663 mRNA_8295 0.80 +1.0
871,016 - +2.5
871,200 - +0.8
871,201 - -0.3
871,209 - +1.1
871,354 + +0.3
871,682 + 16664 mRNA_8296 0.10 +1.0
872,781 - 16664 mRNA_8296 0.38 +0.0
872,943 - 16664 mRNA_8296 0.42 +1.7
873,389 - 16664 mRNA_8296 0.53 +1.7
873,653 + 16664 mRNA_8296 0.59 -0.4
873,806 + 16664 mRNA_8296 0.63 -1.2
873,872 - 16664 mRNA_8296 0.65 -1.7
873,941 - 16664 mRNA_8296 0.66 -0.1
875,433 + +1.2
875,879 + +0.5
876,040 - -0.0
876,284 - +0.7

Or see this region's nucleotide sequence