Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8383

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16750 and 16751 are separated by 56 nucleotides16751 and 16752 are separated by 650 nucleotides mRNA_8382: 16750 - K00799 GST, gst glutathione S-transferase, at 1,080,378 to 1,081,397 16750 mRNA_8383: 16751 - Interpro Stealth protein CR2, conserved region 2 Stealth protein CR3, conserved region 3, at 1,081,454 to 1,084,319 16751 mRNA_8384: 16752 - KOG4401 Uncharacterized conserved protein, at 1,084,970 to 1,085,744 16752

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,080,486 - 16750 mRNA_8382 0.11 +0.1
1,080,488 + 16750 mRNA_8382 0.11 +0.2
1,080,601 + 16750 mRNA_8382 0.22 -1.2
1,080,776 + 16750 mRNA_8382 0.39 +1.6
1,080,992 - 16750 mRNA_8382 0.60 +0.6
1,081,047 + 16750 mRNA_8382 0.66 +0.3
1,081,171 - 16750 mRNA_8382 0.78 +1.0
1,081,272 - 16750 mRNA_8382 0.88 +0.9
1,081,336 + -0.8
1,081,345 + +0.0
1,081,592 - -1.2
1,082,099 + 16751 mRNA_8383 0.23 +0.2
1,082,177 - 16751 mRNA_8383 0.25 -1.8
1,082,211 - 16751 mRNA_8383 0.26 -2.7
1,082,225 + 16751 mRNA_8383 0.27 +0.3
1,082,648 - 16751 mRNA_8383 0.42 -0.1
1,082,671 + 16751 mRNA_8383 0.42 -1.2
1,083,107 + 16751 mRNA_8383 0.58 +1.9
1,083,559 + 16751 mRNA_8383 0.73 +0.2
1,084,308 + +0.3
1,084,390 + -0.1
1,084,552 + +0.0
1,084,657 + -0.2
1,084,710 - -0.3
1,084,765 - +0.2
1,084,820 - +0.2
1,084,820 - +0.0
1,084,910 - -0.0
1,084,913 + +0.7
1,085,191 - 16752 mRNA_8384 0.29 +0.5
1,085,199 - 16752 mRNA_8384 0.30 +0.1
1,085,301 + 16752 mRNA_8384 0.43 +0.4

Or see this region's nucleotide sequence