Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8471

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16837 and 16838 are separated by 169 nucleotides16838 and 16839 are separated by 51 nucleotides16839 and 16840 are separated by 481 nucleotides mRNA_8469: 16837 - K14654 RIB7, arfC 2,5-diamino-6-(ribosylamino)-4(3H)-pyrimidinone 5'-phosphate reductase, at 1,306,981 to 1,308,021 16837 mRNA_8470: 16838 - Hypothetical Protein, at 1,308,191 to 1,308,727 16838 mRNA_8471: 16839 - Hypothetical Protein, at 1,308,779 to 1,309,608 16839 mRNA_8472: 16840 - KOG1769 Ubiquitin-like proteins, at 1,310,090 to 1,310,770 16840

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,308,359 - 16838 mRNA_8470 0.31 +2.0
1,308,660 - 16838 mRNA_8470 0.87 -0.7
1,308,785 - -0.3
1,308,825 - +0.2
1,309,096 - 16839 mRNA_8471 0.38 +0.1
1,309,108 - 16839 mRNA_8471 0.40 -0.0
1,309,377 - 16839 mRNA_8471 0.72 -2.0
1,309,507 - 16839 mRNA_8471 0.88 -1.1
1,309,545 + -0.3
1,309,666 + +0.1
1,309,756 + +0.4
1,310,136 + -0.1
1,310,383 - 16840 mRNA_8472 0.43 -0.1
1,310,397 + 16840 mRNA_8472 0.45 -1.5
1,310,401 + 16840 mRNA_8472 0.46 -0.8

Or see this region's nucleotide sequence