Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_144

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8511 and 8512 are separated by 437 nucleotides8512 and 8513 are separated by 284 nucleotides mRNA_143: 8511 - KOG4136 Predicted mitochondrial cholesterol transporter, at 356,168 to 357,922 8511 mRNA_144: 8512 - K00698 CHS1 chitin synthase, at 358,360 to 365,387 8512 mRNA_145: 8513 - KOG3299 Uncharacterized conserved protein, at 365,672 to 367,146 8513

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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357,702 + 8511 mRNA_143 0.87 -0.6
357,818 - -0.1
357,821 - -0.1
357,848 - -0.4
357,851 - -0.6
357,968 + +0.2
357,976 + -1.7
357,977 - +0.2
357,987 - -0.6
357,987 + +2.1
357,994 + +0.0
357,997 - -0.9
358,000 - -0.9
358,000 - -0.1
358,005 - -1.4
358,005 - -0.4
358,006 - -0.8
358,006 + +0.2
358,079 - -0.8
358,123 - -0.3
358,126 - +0.7
358,131 - -0.1
358,133 - -0.0
358,133 - -0.1
358,134 - -1.1
358,141 + -0.2
358,151 + -0.3
358,156 + -0.0
358,157 + +0.8
358,157 + +1.1
358,161 + -0.9
358,254 + -0.3
358,281 - -1.8
358,290 - +0.2
358,314 + +0.1
358,432 - -0.5
358,470 - -1.3
358,513 + -0.1
358,604 - -0.4
358,609 + -0.2
358,627 - -0.1
358,640 + -0.4
358,789 + +2.6
359,212 + 8512 mRNA_144 0.12 +0.3
359,509 - 8512 mRNA_144 0.16 +0.7
359,921 - 8512 mRNA_144 0.22 -0.3
360,046 - 8512 mRNA_144 0.24 -0.3
360,355 + 8512 mRNA_144 0.28 +0.6
360,470 - 8512 mRNA_144 0.30 +0.5
360,491 + 8512 mRNA_144 0.30 -0.0
360,492 - 8512 mRNA_144 0.30 +0.2
360,657 - 8512 mRNA_144 0.33 -1.2
361,622 + 8512 mRNA_144 0.46 -1.4
361,839 - 8512 mRNA_144 0.50 +1.1
361,956 + 8512 mRNA_144 0.51 -2.1
361,962 + 8512 mRNA_144 0.51 +0.4
362,349 + 8512 mRNA_144 0.57 -0.0
362,496 - 8512 mRNA_144 0.59 +1.1
362,591 - 8512 mRNA_144 0.60 -0.1
362,625 + 8512 mRNA_144 0.61 -1.2
362,930 - 8512 mRNA_144 0.65 -0.8
362,989 - 8512 mRNA_144 0.66 -1.3
362,990 - 8512 mRNA_144 0.66 -0.1
363,040 - 8512 mRNA_144 0.67 -2.6
363,099 - 8512 mRNA_144 0.67 +0.4
363,249 - 8512 mRNA_144 0.70 -0.6
363,970 + 8512 mRNA_144 0.80 -1.4
364,014 + 8512 mRNA_144 0.80 +0.4
364,443 + 8512 mRNA_144 0.87 +1.1
364,446 + 8512 mRNA_144 0.87 -1.5
364,591 + 8512 mRNA_144 0.89 -0.4
364,603 + 8512 mRNA_144 0.89 -0.6
365,192 + -0.3
365,197 + -0.1
365,314 + +0.0
365,440 + +0.2
365,465 - -0.2
365,472 - -1.0
365,517 + +0.1
365,617 + -0.5
365,631 + +0.1
365,759 - +0.5
365,759 - +0.5
365,766 + +0.4

Or see this region's nucleotide sequence