Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_148

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8515 and 8516 are separated by 205 nucleotides8516 and 8517 are separated by 408 nucleotides mRNA_147: 8515 - K20120 BIN3 bridging integrator 3, at 368,683 to 371,935 8515 mRNA_148: 8516 - KOG0254 Predicted transporter (major facilitator superfamily), at 372,141 to 374,463 8516 mRNA_149: 8517 - Hypothetical Protein, at 374,872 to 375,333 8517

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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371,848 + -1.0
372,102 - -1.0
372,109 - -0.9
372,152 - -0.5
372,245 - -1.8
372,314 + +1.4
372,754 + 8516 mRNA_148 0.26 +0.9
372,778 + 8516 mRNA_148 0.27 +0.4
372,838 - 8516 mRNA_148 0.30 -0.3
372,849 + 8516 mRNA_148 0.30 +0.6
372,850 - 8516 mRNA_148 0.31 +0.9
372,909 + 8516 mRNA_148 0.33 -1.4
372,972 + 8516 mRNA_148 0.36 +0.5
373,158 - 8516 mRNA_148 0.44 +1.9
373,213 + 8516 mRNA_148 0.46 +0.9
373,313 + 8516 mRNA_148 0.50 -0.4
373,440 + 8516 mRNA_148 0.56 -0.6
373,476 - 8516 mRNA_148 0.57 +2.0
373,747 - 8516 mRNA_148 0.69 +0.8
374,013 - 8516 mRNA_148 0.81 -1.1
374,153 + 8516 mRNA_148 0.87 +0.5
374,189 - 8516 mRNA_148 0.88 +0.4
374,197 + 8516 mRNA_148 0.89 +0.1
374,342 + -1.3
374,366 - +0.9
374,373 - +1.3
374,381 - -0.1
374,409 - -1.0
374,491 + +1.0
374,495 - -0.8
374,513 - +0.7
374,513 - -1.5
374,521 - -0.3
374,533 + +0.1
374,533 - +1.0
374,541 - -1.3
374,560 + +1.1
374,566 - +0.6
374,570 - +0.3
374,575 + -0.4
374,594 + -0.4
374,594 + +0.8
374,614 + -0.6
374,621 - -2.0
374,627 + +0.1
374,627 + +0.7
374,639 - +1.0
374,659 - -0.0
374,659 - -1.1
374,659 - +0.1
374,663 - -1.5
374,664 + -1.0
374,668 - -1.8
374,671 - +0.5
374,675 + -0.5
374,683 + -1.1
374,684 + -0.0
374,684 + -0.5
374,685 + -1.0
374,687 + -1.5
374,695 - -0.7
374,696 + -1.0
374,719 - +0.3
374,726 + +0.6
374,741 + +0.2
374,759 - -0.3
374,820 + -0.8
374,824 - +1.2
374,942 - 8517 mRNA_149 0.15 -1.4
374,983 + 8517 mRNA_149 0.24 +0.4
375,100 + 8517 mRNA_149 0.49 +0.3
375,131 + 8517 mRNA_149 0.56 -0.2
375,138 + 8517 mRNA_149 0.58 -0.7
375,140 + 8517 mRNA_149 0.58 -0.3
375,249 + 8517 mRNA_149 0.82 +1.4
375,258 + 8517 mRNA_149 0.84 -0.5

Or see this region's nucleotide sequence