Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_166

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8533 and 8534 are separated by 313 nucleotides8534 and 8535 are separated by 543 nucleotides mRNA_165: 8533 - K12602 WDR61, REC14, SKI8 WD repeat-containing protein 61, at 407,555 to 409,013 8533 mRNA_166: 8534 - K07936 RAN GTP-binding nuclear protein Ran, at 409,327 to 410,564 8534 mRNA_167: 8535 - KOG1471 Phosphatidylinositol transfer protein SEC14 and related proteins, at 411,108 to 413,532 8535

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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408,365 - 8533 mRNA_165 0.56 -0.2
408,655 + 8533 mRNA_165 0.75 -0.0
408,660 - 8533 mRNA_165 0.76 -0.3
408,703 + 8533 mRNA_165 0.79 +0.4
408,787 - 8533 mRNA_165 0.84 +0.3
409,102 + -0.6
409,105 + -0.2
409,147 + +0.7
411,063 + -0.4
411,085 + -0.4
411,094 + -2.3
411,103 - +0.6
411,214 - +0.0
411,217 - -0.6
411,221 + +0.3
411,226 + -1.4
411,379 - 8535 mRNA_167 0.11 -0.4
411,385 - 8535 mRNA_167 0.11 -0.4
411,387 + 8535 mRNA_167 0.12 +0.3
411,397 + 8535 mRNA_167 0.12 -0.3
411,493 - 8535 mRNA_167 0.16 -0.2
411,536 + 8535 mRNA_167 0.18 -0.0

Or see this region's nucleotide sequence