Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_172

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8539 and 8540 are separated by 499 nucleotides8540 and 8541 are separated by 381 nucleotides mRNA_171: 8539 - K03237 EIF2S1 translation initiation factor 2 subunit 1, at 419,232 to 420,600 8539 mRNA_172: 8540 - K14264 BNA3 kynurenine aminotransferase, at 421,100 to 422,861 8540 mRNA_173: 8541 - ProSiteProfiles-F-box domain profile.-PS50181, at 423,243 to 425,969 8541

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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420,603 + +0.9
420,752 - -0.8
420,908 - +0.5
420,917 + -1.4
421,060 + +0.1
421,356 - 8540 mRNA_172 0.15 -0.2
421,367 + 8540 mRNA_172 0.15 +0.5
421,503 + 8540 mRNA_172 0.23 +0.4
421,657 + 8540 mRNA_172 0.32 +0.2
421,662 + 8540 mRNA_172 0.32 +0.3
421,823 - 8540 mRNA_172 0.41 -0.1
421,971 - 8540 mRNA_172 0.49 -1.6
422,011 - 8540 mRNA_172 0.52 -0.3
422,372 - 8540 mRNA_172 0.72 -0.2
422,392 + 8540 mRNA_172 0.73 +0.4
422,666 - 8540 mRNA_172 0.89 +1.3
422,678 + 8540 mRNA_172 0.90 -0.7
422,822 + -0.5
423,118 - +2.4
423,758 - 8541 mRNA_173 0.19 +1.7

Or see this region's nucleotide sequence