Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_226

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8593 and 8594 are separated by 83 nucleotides8594 and 8595 are separated by 246 nucleotides mRNA_225: 8593 - KOG0619 FOG Leucine rich repeat, at 556,962 to 559,070 8593 mRNA_226: 8594 - KOG2861 Uncharacterized conserved protein, at 559,154 to 560,792 8594 mRNA_227: 8595 - K03259 EIF4E translation initiation factor 4E, at 561,039 to 562,506 8595

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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558,406 + 8593 mRNA_225 0.68 +1.3
558,443 + 8593 mRNA_225 0.70 -0.9
558,954 - -0.5
559,253 - +0.8
559,275 + -0.7
559,300 + -0.2
559,528 - 8594 mRNA_226 0.23 -0.2
559,694 + 8594 mRNA_226 0.33 -0.0
559,701 + 8594 mRNA_226 0.33 -0.2
559,855 + 8594 mRNA_226 0.43 +0.7
560,129 + 8594 mRNA_226 0.59 +0.4
560,425 - 8594 mRNA_226 0.78 +0.0
560,884 - -0.8
561,130 - +0.3
561,429 - 8595 mRNA_227 0.27 +0.1
561,441 + 8595 mRNA_227 0.27 +0.4
561,713 - 8595 mRNA_227 0.46 -1.2

Or see this region's nucleotide sequence