Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_237

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8604 and 8605 are separated by 53 nucleotides mRNA_236: 8604 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SUPERFAMILY--SSF52047, at 580,930 to 582,126 8604 mRNA_237: 8605 - K08098 PIGZ, SMP3 phosphatidylinositol glycan, class Z, at 582,180 to 584,217 8605

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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581,493 - 8604 mRNA_236 0.47 -0.0
581,642 - 8604 mRNA_236 0.59 -0.7
581,950 - 8604 mRNA_236 0.85 -0.6
581,957 + 8604 mRNA_236 0.86 +0.3
582,034 - -0.9
582,076 + +0.5
582,105 + +1.0
582,106 + -1.0
584,244 + +0.3
584,442 + -0.6
584,566 + -0.0
584,582 - +0.8
584,589 - -1.0
584,597 - +0.2
584,606 + -1.8
584,612 - -1.5
584,615 - +0.3
584,730 + +0.5
584,904 + +0.5
584,921 + +0.2
585,039 + +0.7
585,170 - -0.0
585,178 - -0.6

Or see this region's nucleotide sequence