Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_243

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8610 and 8611 are separated by 231 nucleotides8611 and 8612 are separated by 503 nucleotides mRNA_242: 8610 - HMMPfam-CorA-like Mg2+ transporter protein-PF01544,SUPERFAMILY--SSF143865, at 591,583 to 594,875 8610 mRNA_243: 8611 - HMMPfam-Replication factor A protein 3-PF08661,SUPERFAMILY--SSF50249, at 595,107 to 595,773 8611 mRNA_244: 8612 - K17778 TIM10 mitochondrial import inner membrane translocase subunit TIM10, at 596,277 to 596,788 8612

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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594,897 - -2.6
594,980 - +0.2
595,005 + +0.2
595,049 + -1.0
595,057 - -0.3
595,775 - -0.0
596,086 - -0.1
596,209 - -0.3

Or see this region's nucleotide sequence