Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_260

Experiment: 40 hrs High Buoyancy

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8627 and 8628 are separated by 251 nucleotides8628 and 8629 are separated by 19 nucleotides mRNA_259: 8627 - HMMPfam-Domain of unknown function (DUF1771)-PF08590,ProSiteProfiles-Zinc finger C3H1-type profile.-PS50103,ProSiteProfiles-Smr domain profile.-PS50828,SMART-zinc finger-SM00356, at 622,490 to 625,658 8627 mRNA_260: 8628 - KOG2534 DNA polymerase IV (family X), at 625,910 to 627,593 8628 mRNA_261: 8629 - KOG1745 Histones H3 and H4, at 627,613 to 628,433 8629

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
remove
625,752 + -2.1
625,771 - -1.9
625,779 - -0.3
625,784 - -0.2
625,785 + -0.2
625,826 - -0.6
625,835 - -0.4
625,835 + -1.1
625,842 - -0.2
625,847 - -0.8
625,847 + -0.9
625,851 - -1.8
625,858 - +0.3
625,858 - -1.2
625,884 + +0.6
626,007 - +1.6
626,579 + 8628 mRNA_260 0.40 -0.4
626,704 + 8628 mRNA_260 0.47 -0.6
626,748 - 8628 mRNA_260 0.50 -0.1
626,888 - 8628 mRNA_260 0.58 -0.4
627,058 + 8628 mRNA_260 0.68 +1.4
627,061 + 8628 mRNA_260 0.68 -1.1
627,208 + 8628 mRNA_260 0.77 -0.0
627,215 - 8628 mRNA_260 0.77 -0.1
627,500 + -1.3
627,547 + -2.3
627,596 - -0.9
627,680 - -0.4
627,924 + 8629 mRNA_261 0.38 +1.2
628,067 + 8629 mRNA_261 0.55 -0.6
628,194 - 8629 mRNA_261 0.71 +0.6
628,201 + 8629 mRNA_261 0.72 +0.1
628,357 - -0.0

Or see this region's nucleotide sequence