Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_293

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8660 and 8661 are separated by 541 nucleotides8661 and 8662 are separated by 603 nucleotides mRNA_292: 8660 - HMMPfam-Endoplasmic reticulum-based factor for assembly of V-ATPase-PF11712, at 692,166 to 693,130 8660 mRNA_293: 8661 - Hypothetical Protein, at 693,672 to 694,229 8661 mRNA_294: 8662 - Hypothetical Protein, at 694,833 to 695,851 8662

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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693,165 - -0.6
693,179 + -0.1
693,194 + -0.6
693,220 + +0.6
693,495 - +1.6
693,620 - +0.2
693,752 - 8661 mRNA_293 0.14 -0.3
694,051 - 8661 mRNA_293 0.68 -0.0
694,216 + +2.1
694,343 + -1.9
694,349 + -0.4
694,382 - -0.0
694,553 - +1.2
694,637 + -0.3
694,650 + -0.1
694,652 - -1.5
694,971 + 8662 mRNA_294 0.14 +0.2

Or see this region's nucleotide sequence