Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_300

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8667 and 8668 are separated by 635 nucleotides mRNA_299: 8667 - ProSiteProfiles-SET domain profile.-PS50280,SUPERFAMILY--SSF82199, at 707,483 to 708,587 8667 mRNA_300: 8668 - BLAST transcription factor hoxa13 [Aspergillus bombycis], at 709,223 to 712,870 8668

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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708,303 + 8667 mRNA_299 0.74 -0.3
708,490 - -0.5
708,731 - -1.2
708,734 - +1.1
708,734 + +0.2
709,004 + +1.2
709,028 + -0.2
709,138 - -0.4
709,159 - +0.7
709,180 + -1.3
709,188 - -3.4
709,215 + +0.0
709,243 - +0.8
709,317 - +0.9
709,342 + -2.7
709,443 - -0.6
709,474 - -0.5
709,502 + +0.5
709,626 - 8668 mRNA_300 0.11 -1.5
709,631 - 8668 mRNA_300 0.11 +0.4
709,916 - 8668 mRNA_300 0.19 -0.7
709,945 + 8668 mRNA_300 0.20 -0.7
710,214 - 8668 mRNA_300 0.27 -0.0
710,501 + 8668 mRNA_300 0.35 -1.2
710,932 - 8668 mRNA_300 0.47 -3.5
710,970 - 8668 mRNA_300 0.48 -0.2
711,209 + 8668 mRNA_300 0.54 -1.2
711,592 - 8668 mRNA_300 0.65 +0.4
711,658 - 8668 mRNA_300 0.67 +1.3
712,422 + 8668 mRNA_300 0.88 -1.4
712,561 - -0.3
713,004 - +0.4
713,107 - +0.0
713,250 - -0.4
713,278 + -0.3
713,283 + +0.1
713,404 + -0.5
713,417 - -0.0
713,418 - +1.0
713,422 + -0.1
713,423 - -0.5
713,443 + -0.0
713,443 + -2.0
713,447 + -0.2
713,477 - -0.6
713,483 - +0.8
713,490 + -0.6
713,529 + +0.7
713,533 + -0.7
713,537 - -0.2
713,544 - -0.4
713,545 - +0.1
713,547 + -0.4
713,550 + +0.1
713,556 - -0.8
713,563 + -1.2
713,566 - -0.8
713,576 - -1.9
713,581 + -0.2
713,698 - -0.1
713,715 + +0.2
713,716 + -0.4
713,720 - -0.7
713,868 + +0.2

Or see this region's nucleotide sequence