Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_314

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8681 and 8682 are separated by 296 nucleotides8682 and 8683 are separated by 224 nucleotides mRNA_313: 8681 - Hypothetical Protein, at 747,815 to 749,312 8681 mRNA_314: 8682 - K13091 RBM39, RNPC2 RNA-binding protein 39, at 749,609 to 751,814 8682 mRNA_315: 8683 - Hypothetical Protein, at 752,039 to 753,953 8683

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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749,060 - 8681 mRNA_313 0.83 -0.1
749,347 - +0.9
749,364 - +0.5
749,377 - -0.7
749,399 + -0.8
749,399 + -0.0
749,506 + +0.2
749,995 - 8682 mRNA_314 0.17 -0.7
751,422 + 8682 mRNA_314 0.82 +0.3
751,689 - +0.2
751,708 - -0.1
751,711 - +0.5
751,713 + +0.7
751,716 + +0.3
751,836 - +0.3
751,838 - -0.2
751,843 - +1.3
751,844 - -1.0
751,849 + -0.5
751,850 - +1.0
751,874 + +0.0
751,875 + -0.8
751,980 + +0.3
751,987 - -0.8
752,009 + -0.7
752,009 - -0.2
752,010 + -0.6
752,031 + +0.2
752,032 - -0.1
752,041 - -0.5
752,049 + -0.6
752,050 + -0.6
752,061 + -0.2
752,067 - +0.2
752,069 + -0.4
752,069 - -0.0
752,081 + -0.1
752,084 + -0.9
752,086 + -0.2
752,088 + +0.2
752,100 + -0.4
752,112 + -0.4
752,123 + -1.4
752,134 + -1.2
752,142 - +0.5
752,157 - +0.7
752,161 + -0.4
752,161 + -1.1
752,162 - -0.2
752,175 - +0.1
752,189 + -0.2
752,191 + -0.3
752,192 + +1.3
752,192 + +0.7
752,212 + -0.2
752,213 - +0.5
752,227 - +0.5
752,272 + 8683 mRNA_315 0.12 +0.3
752,274 - 8683 mRNA_315 0.12 +0.4
752,283 + 8683 mRNA_315 0.13 -0.2
752,288 - 8683 mRNA_315 0.13 -0.8
752,293 + 8683 mRNA_315 0.13 +0.3
752,295 - 8683 mRNA_315 0.13 +0.4
752,305 - 8683 mRNA_315 0.14 +0.2
752,313 - 8683 mRNA_315 0.14 -1.4
752,315 - 8683 mRNA_315 0.14 -0.5
752,327 + 8683 mRNA_315 0.15 -0.0
752,349 - 8683 mRNA_315 0.16 -0.7
752,354 - 8683 mRNA_315 0.16 +0.7
752,362 + 8683 mRNA_315 0.17 +0.3
752,389 + 8683 mRNA_315 0.18 +0.9
752,393 + 8683 mRNA_315 0.18 -0.5
752,404 + 8683 mRNA_315 0.19 -0.2
752,416 - 8683 mRNA_315 0.20 +0.4
752,424 + 8683 mRNA_315 0.20 -0.5
752,424 - 8683 mRNA_315 0.20 +0.4
752,444 - 8683 mRNA_315 0.21 -0.4
752,448 + 8683 mRNA_315 0.21 -0.1
752,463 + 8683 mRNA_315 0.22 -0.7
752,503 - 8683 mRNA_315 0.24 +0.1
752,629 - 8683 mRNA_315 0.31 -0.2
752,662 - 8683 mRNA_315 0.33 +0.6
752,692 - 8683 mRNA_315 0.34 +0.5
752,748 + 8683 mRNA_315 0.37 -0.8

Or see this region's nucleotide sequence