Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_345

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8712 and 8713 are separated by 336 nucleotides8713 and 8714 are separated by 656 nucleotides mRNA_344: 8712 - K00914 PIK3C3, VPS34 phosphatidylinositol 3-kinase, at 804,255 to 807,496 8712 mRNA_345: 8713 - HMMPfam-Mis12-Mtw1 protein family-PF08202, at 807,833 to 810,278 8713 mRNA_346: 8714 - KOG3113 Uncharacterized conserved protein, at 810,935 to 812,073 8714

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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807,047 - 8712 mRNA_344 0.86 +0.2
807,534 - +0.3
807,687 + -0.8
807,694 + +0.4
807,695 + +0.5
807,695 + +1.3
807,839 - -2.4
810,286 + -0.2
810,289 - +0.4
810,290 - -0.3
810,292 + -0.5
810,313 + +0.0
810,328 - -1.5
810,410 - -1.1
810,436 - +0.8
810,452 + -1.2
810,460 + -0.2
810,461 + -1.5
810,598 - -0.4
810,603 + +0.3
810,614 + -0.1
810,746 - -1.7
810,893 - +1.6
810,900 - -0.5
810,903 + -0.7

Or see this region's nucleotide sequence