Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_381

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8748 and 8749 are separated by 170 nucleotides8749 and 8750 are separated by 250 nucleotides mRNA_380: 8748 - K15322 TSEN2 tRNA-splicing endonuclease subunit Sen2, at 884,980 to 886,576 8748 mRNA_381: 8749 - K10415 DYNC1I, DNCI dynein intermediate chain, cytosolic, at 886,747 to 889,332 8749 mRNA_382: 8750 - Hypothetical Protein, at 889,583 to 890,268 8750

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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886,600 - -0.8
886,606 + +0.1
886,610 - +1.7
886,643 - +1.3
886,648 - -0.9
886,872 + +0.4
889,568 + +0.4
889,569 + +0.4
889,585 + +0.3
889,673 + 8750 mRNA_382 0.13 +0.1
889,876 - 8750 mRNA_382 0.43 -0.4
889,981 - 8750 mRNA_382 0.58 +0.0
890,134 - 8750 mRNA_382 0.80 +0.6
890,142 + 8750 mRNA_382 0.81 +1.9
890,148 + 8750 mRNA_382 0.82 +0.2

Or see this region's nucleotide sequence