Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_439

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8806 and 8807 are separated by 306 nucleotides8807 and 8808 are separated by 892 nucleotides mRNA_438: 8806 - Hypothetical Protein, at 1,015,167 to 1,016,657 8806 mRNA_439: 8807 - KOG2246 Galactosyltransferases, at 1,016,964 to 1,019,320 8807 mRNA_440: 8808 - HMMPfam-G protein-coupled glucose receptor regulating Gpa2-PF11710,SUPERFAMILY--SSF81321, at 1,020,213 to 1,022,062 8808

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,016,467 + 8806 mRNA_438 0.87 -1.5
1,016,476 + 8806 mRNA_438 0.88 -0.0
1,016,592 - -0.3
1,016,593 + -0.2
1,016,593 + +0.2
1,016,593 - +0.4
1,016,596 - -0.4
1,016,671 + +0.9
1,016,869 + -0.0
1,016,903 + +0.1
1,016,904 + -0.9
1,016,906 + +0.2
1,017,046 - +0.5
1,017,140 + -0.7
1,017,346 - 8807 mRNA_439 0.16 +0.7
1,017,441 - 8807 mRNA_439 0.20 +1.3
1,017,772 + 8807 mRNA_439 0.34 -0.0
1,017,866 - 8807 mRNA_439 0.38 +0.1
1,018,290 - 8807 mRNA_439 0.56 -0.1
1,018,340 + 8807 mRNA_439 0.58 -0.0
1,018,874 - 8807 mRNA_439 0.81 +1.7
1,018,890 - 8807 mRNA_439 0.82 +0.1
1,019,043 + 8807 mRNA_439 0.88 +0.6
1,019,187 + -0.1
1,019,318 - -0.5
1,019,320 - -1.0
1,019,347 + +0.2
1,019,347 - -0.7
1,019,352 + -1.1
1,019,371 - -0.2
1,019,391 - -2.8
1,019,455 - -0.4
1,019,488 - -0.0
1,019,492 + +0.3
1,019,496 + -0.4
1,019,497 + -0.9
1,019,502 + -0.3
1,019,518 + +0.1
1,019,632 - +0.3
1,019,634 + -0.1
1,019,636 + +0.2
1,019,643 + -1.7
1,019,662 + -0.1
1,019,686 + -0.8
1,019,700 + -0.5
1,019,711 + +1.8
1,019,729 - +0.1
1,019,729 - +0.1
1,019,731 + -0.6
1,019,735 + +0.9
1,019,736 + -0.6
1,019,743 - +0.2
1,019,766 - +0.2
1,019,778 + -0.2
1,019,881 + -1.2
1,019,886 + +0.4
1,019,891 - -1.6
1,019,900 + +1.1
1,019,907 - +0.1
1,019,907 + -0.2
1,019,909 + -0.4
1,019,981 - +1.1
1,019,982 + -0.2
1,019,982 + -0.4
1,019,982 + -2.1
1,020,071 - -0.5
1,020,097 + +1.1
1,020,242 - +2.1
1,020,258 + -0.2

Or see this region's nucleotide sequence