Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_443

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8810 and 8811 are separated by 225 nucleotides8811 and 8812 are separated by 335 nucleotides mRNA_442: 8810 - K11835 USP4_11_15, UBP12 ubiquitin carboxyl-terminal hydrolase 4/11/15, at 1,024,579 to 1,029,147 8810 mRNA_443: 8811 - KOG2742 Predicted oxidoreductase, at 1,029,373 to 1,030,485 8811 mRNA_444: 8812 - HMMPfam-Transcription factor IIIC subunit delta N-term-PF12657,HMMPfam-Putative zinc-finger of transcription factor IIIC complex-PF12660,SUPERFAMILY--SSF50978, at 1,030,821 to 1,034,414 8812

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,028,753 + +0.1
1,029,152 - +0.0
1,029,165 - -0.2
1,029,182 - +1.1
1,029,192 + +0.4
1,029,201 - +0.0
1,029,434 - -0.9
1,029,475 - -0.7
1,029,780 + 8811 mRNA_443 0.37 -1.0
1,029,920 + 8811 mRNA_443 0.49 +0.0
1,030,203 + 8811 mRNA_443 0.75 +1.3
1,030,359 - 8811 mRNA_443 0.89 -0.4
1,030,364 + 8811 mRNA_443 0.89 +0.5
1,030,379 + +0.9
1,030,669 - -1.2
1,030,674 + -0.3
1,030,679 + +1.2
1,030,681 + +0.7
1,030,691 + +0.1
1,030,813 + -1.2

Or see this region's nucleotide sequence