Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_485

Experiment: 40 hrs High Buoyancy

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8852 and 8853 are separated by 412 nucleotides8853 and 8854 are separated by 190 nucleotides mRNA_484: 8852 - Hypothetical Protein, at 1,151,977 to 1,154,074 8852 mRNA_485: 8853 - K13278 ASPG 60kDa lysophospholipase, at 1,154,487 to 1,156,857 8853 mRNA_486: 8854 - HMMPfam-Domain of unknown function (DUF202)-PF02656, at 1,157,048 to 1,157,778 8854

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
remove
1,153,513 - 8852 mRNA_484 0.73 -0.4
1,153,516 + 8852 mRNA_484 0.73 +0.2
1,153,541 + 8852 mRNA_484 0.75 -2.0
1,153,645 - 8852 mRNA_484 0.80 -0.1
1,153,653 + 8852 mRNA_484 0.80 -0.5
1,153,653 - 8852 mRNA_484 0.80 -0.4
1,153,681 - 8852 mRNA_484 0.81 -0.8
1,153,684 + 8852 mRNA_484 0.81 -1.0
1,153,687 - 8852 mRNA_484 0.82 -0.2
1,153,693 + 8852 mRNA_484 0.82 -1.2
1,153,709 - 8852 mRNA_484 0.83 +0.4
1,153,714 - 8852 mRNA_484 0.83 +0.7
1,153,718 + 8852 mRNA_484 0.83 -0.0
1,153,724 + 8852 mRNA_484 0.83 +0.6
1,153,731 - 8852 mRNA_484 0.84 -0.0
1,153,732 + 8852 mRNA_484 0.84 +0.1
1,153,735 - 8852 mRNA_484 0.84 +0.4
1,153,738 + 8852 mRNA_484 0.84 +0.5
1,153,748 - 8852 mRNA_484 0.84 -1.1
1,153,751 - 8852 mRNA_484 0.85 -0.7
1,153,753 - 8852 mRNA_484 0.85 +1.1
1,153,769 + 8852 mRNA_484 0.85 -1.8
1,153,771 + 8852 mRNA_484 0.86 -0.5
1,153,783 + 8852 mRNA_484 0.86 -0.6
1,153,795 - 8852 mRNA_484 0.87 -0.4
1,153,798 - 8852 mRNA_484 0.87 +1.0
1,153,804 + 8852 mRNA_484 0.87 +0.5
1,153,814 + 8852 mRNA_484 0.88 +0.5
1,153,814 + 8852 mRNA_484 0.88 -0.1
1,153,877 - -0.0
1,153,884 + -1.3
1,153,902 + -1.8
1,153,902 + +2.0
1,153,920 - -0.5
1,153,943 + -0.1
1,153,949 + +1.4
1,153,962 + +0.1
1,153,964 + +1.9
1,153,965 + -0.9
1,153,979 - -0.1
1,154,003 - +0.3
1,154,027 + -0.5
1,154,034 + -0.4
1,154,089 - -0.2
1,154,099 - +0.4
1,154,128 + -1.7
1,154,136 + -1.2
1,154,269 - +0.3
1,154,270 - -0.9
1,154,411 + -1.6
1,154,414 - -0.3
1,154,429 - +0.3
1,154,430 + +0.2
1,154,472 - -0.4
1,154,505 - -0.3
1,154,511 + -1.0
1,154,521 + -1.1
1,154,532 - -0.7
1,154,551 + -0.5
1,154,561 - -1.4
1,154,612 + -1.2
1,154,615 + -1.3
1,154,622 + -0.3
1,154,623 + +0.9
1,154,628 + -1.8
1,154,809 - 8853 mRNA_485 0.14 -0.8
1,154,863 - 8853 mRNA_485 0.16 +0.5
1,154,870 - 8853 mRNA_485 0.16 -0.2
1,154,909 + 8853 mRNA_485 0.18 -0.5
1,155,179 - 8853 mRNA_485 0.29 -0.5
1,155,194 - 8853 mRNA_485 0.30 +1.4
1,155,312 - 8853 mRNA_485 0.35 -1.9
1,155,359 - 8853 mRNA_485 0.37 -0.4
1,155,470 - 8853 mRNA_485 0.41 -0.6
1,155,612 - 8853 mRNA_485 0.47 -0.5
1,155,762 - 8853 mRNA_485 0.54 +0.1
1,156,040 + 8853 mRNA_485 0.65 -1.1
1,156,295 + 8853 mRNA_485 0.76 +0.5
1,156,479 - 8853 mRNA_485 0.84 +1.0
1,156,601 - 8853 mRNA_485 0.89 -2.4
1,156,904 - -0.5
1,156,930 - -0.1
1,156,965 + +0.1
1,157,108 - -0.9
1,157,250 - 8854 mRNA_486 0.28 -0.8
1,157,415 - 8854 mRNA_486 0.50 +0.5
1,157,538 - 8854 mRNA_486 0.67 +1.1
1,157,822 + -1.2
1,157,834 + +0.2

Or see this region's nucleotide sequence