Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_599

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8966 and 8967 are separated by 133 nucleotides mRNA_598: 8966 - ProSiteProfiles-F-box domain profile.-PS50181, at 1,437,888 to 1,441,324 8966 mRNA_599: 8967 - HMMPfam-2'-5' RNA ligase superfamily-PF13563,SUPERFAMILY--SSF55144, at 1,441,458 to 1,442,153 8967

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,440,901 + 8966 mRNA_598 0.88 -0.3
1,440,909 + 8966 mRNA_598 0.88 -0.6
1,441,048 - -2.5
1,441,247 + -0.2
1,441,287 - -0.6
1,441,319 + -1.9
1,441,636 + 8967 mRNA_599 0.26 -0.4
1,441,648 - 8967 mRNA_599 0.27 -0.1
1,441,759 + 8967 mRNA_599 0.43 +0.1
1,441,801 + 8967 mRNA_599 0.49 +0.5
1,441,945 + 8967 mRNA_599 0.70 -0.9
1,442,065 - 8967 mRNA_599 0.87 -0.2
1,442,200 - -0.4
1,442,223 - -0.8
1,442,414 - -0.6
1,442,548 + -0.8
1,442,548 + -0.6
1,442,554 - +0.1
1,442,660 + -0.7
1,442,814 + -0.2
1,442,818 - +0.8
1,442,819 + +0.3
1,442,955 - -1.0
1,442,988 + +0.2
1,443,083 + -1.5
1,443,091 - -0.5
1,443,105 - -0.1
1,443,122 - +0.1
1,443,136 + +0.5
1,443,136 + +0.2
1,443,138 - -0.7
1,443,152 + +0.9

Or see this region's nucleotide sequence