Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_606

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8973 and 8974 are separated by 998 nucleotides8974 and 8975 are separated by 269 nucleotides mRNA_605: 8973 - SUPERFAMILY--SSF52047, at 1,455,280 to 1,456,250 8973 mRNA_606: 8974 - K06867 K06867 uncharacterized protein, at 1,457,249 to 1,458,122 8974 mRNA_607: 8975 - K00140 mmsA, iolA, ALDH6A1 malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase, at 1,458,392 to 1,460,964 8975

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,456,288 - -1.2
1,456,738 - -0.3
1,456,882 + -0.3
1,457,054 + +0.4
1,457,058 + -0.8
1,457,130 - -1.3
1,457,206 + -0.8
1,457,227 + +1.3
1,458,503 - -0.0
1,458,648 + -1.2
1,458,787 + 8975 mRNA_607 0.15 -0.2
1,458,792 - 8975 mRNA_607 0.16 -0.0
1,458,967 + 8975 mRNA_607 0.22 +0.3
1,459,071 + 8975 mRNA_607 0.26 +0.1

Or see this region's nucleotide sequence