Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_653

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9020 and 9021 are separated by 294 nucleotides9021 and 9022 are separated by 508 nucleotides mRNA_652: 9020 - HMMPfam-Acetyltransferase (GNAT) family-PF00583,ProSiteProfiles-Gcn5-related N-acetyltransferase (GNAT) domain profile.-PS51186,SUPERFAMILY--SSF55729, at 1,570,188 to 1,571,223 9020 mRNA_653: 9021 - HMMPfam-RTA1 like protein-PF04479, at 1,571,518 to 1,572,791 9021 mRNA_654: 9022 - K14809 DDX55, SPB4 ATP-dependent RNA helicase DDX55/SPB4, at 1,573,300 to 1,575,930 9022

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,570,888 - 9020 mRNA_652 0.68 -0.8
1,570,893 - 9020 mRNA_652 0.68 -1.0
1,571,176 + +0.6
1,571,500 + +0.0
1,571,757 + 9021 mRNA_653 0.19 +0.1
1,571,926 - 9021 mRNA_653 0.32 -1.4
1,572,638 - 9021 mRNA_653 0.88 -1.3
1,572,658 - 9021 mRNA_653 0.89 -0.7
1,572,666 + -0.9
1,572,806 + +1.7
1,572,825 + -1.9
1,572,932 + -1.6
1,572,944 + -0.3
1,572,945 + -1.8
1,572,948 - +0.4
1,572,952 - -0.2
1,572,953 + +1.8
1,572,964 + -2.2
1,572,986 - +0.3
1,573,241 + -0.3
1,573,243 - -1.2
1,573,269 + -0.1
1,573,271 - -0.2
1,573,276 + -1.9

Or see this region's nucleotide sequence