Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_681

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9048 and 9049 are separated by 252 nucleotides9049 and 9050 are separated by 131 nucleotides mRNA_680: 9048 - K03094 SKP1, CBF3D S-phase kinase-associated protein 1, at 1,632,365 to 1,633,590 9048 mRNA_681: 9049 - K00987 CEG1 mRNA guanylyltransferase, at 1,633,843 to 1,636,121 9049 mRNA_682: 9050 - K01487 E3.5.4.3, guaD guanine deaminase, at 1,636,253 to 1,638,256 9050

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,633,658 - +0.3
1,633,661 + -1.5
1,633,669 + +0.0
1,633,788 + +0.1
1,636,281 + +0.3
1,636,558 - 9050 mRNA_682 0.15 -0.4
1,636,562 + 9050 mRNA_682 0.15 +0.2
1,636,713 + 9050 mRNA_682 0.23 -0.6
1,636,937 + 9050 mRNA_682 0.34 -1.3

Or see this region's nucleotide sequence