Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_716

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9084 and 9085 are separated by 447 nucleotides mRNA_716: 9084 - K01663 HIS7 glutamine amidotransferase / cyclase, at 1,709,868 to 1,711,961 9084 mRNA_717: 9085 - K00058 serA, PHGDH D-3-phosphoglycerate dehydrogenase, at 1,712,409 to 1,714,095 9085

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,708,919 - -0.8
1,708,941 + +0.2
1,709,086 + -0.3
1,709,101 - -0.0
1,709,245 + -0.1
1,709,598 - -1.6
1,709,816 + +0.7
1,709,821 + -0.3
1,712,003 + -0.2
1,712,140 - -1.2
1,712,162 - -0.1
1,712,186 - -1.0
1,712,199 + -0.1
1,712,283 + -0.5
1,712,740 - 9085 mRNA_717 0.20 +0.3

Or see this region's nucleotide sequence