Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_740

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9107 and 9108 are separated by 230 nucleotides9108 and 9109 are separated by 153 nucleotides mRNA_739: 9107 - K07359 CAMKK calcium/calmodulin-dependent protein kinase kinase, at 1,762,506 to 1,766,867 9107 mRNA_740: 9108 - K13103 TFIP11 tuftelin-interacting protein 11, at 1,767,098 to 1,770,950 9108 mRNA_741: 9109 - K12858 DDX23, PRP28 ATP-dependent RNA helicase DDX23/PRP28, at 1,771,104 to 1,774,231 9109

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,766,100 + 9107 mRNA_739 0.82 +0.9
1,766,260 + 9107 mRNA_739 0.86 -0.1
1,767,067 - -1.0
1,771,033 - -2.3
1,771,041 + -0.5
1,771,049 + +0.7

Or see this region's nucleotide sequence